FastQCFastQC Report
Mon 6 Jun 2016
ERR1379037.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379037.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences734709
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT301.1397645E-437.49864242
TCGTATG301.1397645E-437.49864243
CGTATGC352.8199938E-432.14169344
CGCCACG352.8199938E-432.14169332
TCTCGTA406.1653176E-428.12397841
ACCGCCA507.156713E-526.99901830
ACGCATC450.001226392724.99909236
CATCTCG450.001226392724.99909239
GAGCGGT551.3659889E-424.5495766
AGAGCGG551.3659889E-424.5495765
ATCTCGT602.46694E-422.49918440
GACCGCC550.003936034620.45380229
AGACCGC550.003936034620.45380228
CTTCGTA1009.048945E-720.2492648
AGCGGTT807.5603646E-519.6867857
CGCATCT600.006509676618.74932137
TCGTTGG1507.237759E-918.0030234
GCGGTTC750.001109975317.9993488
CCTTCGT1406.444134E-817.6839471
CGGTTCA800.00171046716.8743889
Produced by FastQC (version 0.11.5)