FastQCFastQC Report
Mon 6 Jun 2016
ERR1379032.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379032.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1052872
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT702.8861905E-828.92802242
CGTATGC755.639231E-826.99948544
GAGCGGT801.05284926E-725.3144256
AGAGCGG801.05284926E-725.3144255
TCGCAGG450.001226622324.99952516
TCTCGTA851.8936771E-723.82307841
CCGAATA602.464465E-422.5038472
AACGGGT500.002264734822.49957312
GAGACCG1056.1078026E-821.42816527
CGGAAGA955.521724E-721.3194351
CCGAGAC1009.055093E-720.24961525
AGCGGTT1151.5953447E-719.5648467
AAGAGCG1051.4442812E-619.287184
GCGGTTC1051.4455945E-619.2853498
CGGTTCA1051.4455945E-619.2853499
CCGTGAA1051.4455945E-619.28534931
AGACCGT1051.4455945E-619.28534928
TCGTATG1051.4455945E-619.28534943
ATGCCGA1051.4455945E-619.28534922
CCTTCGT1555.329639E-1018.8741931
Produced by FastQC (version 0.11.5)