FastQCFastQC Report
Mon 6 Jun 2016
ERR1379031.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379031.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1150989
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAACGT300.005148404329.99863831
CTCGTAT500.00226520922.49897842
CACGTAG600.006512208418.74914716
ACGGGAT1501.4234683E-716.49925213
TCGTTGG2202.1645974E-1015.3442134
CGGAAGC1209.755946E-514.99931926
ACTAGAC4500.014.99931919
CCGGGTT950.00537763714.2098828
AATCTCG950.00537763714.20988218
CCTTCGT1504.2549254E-513.5052551
CGGGATT2002.4913788E-713.49938714
CGTTGGA2401.2076271E-813.1278275
AACGGGA2401.2119926E-813.12440412
TCGGCTC2257.384551E-812.9994122
GGAAACG2257.384551E-812.999419
TTCGTTG2951.3242243E-912.2081393
ACCACGC2301.3552635E-611.7385979
AAACGGG2758.078132E-811.45402611
GAAACGG2604.838075E-711.2494910
TATCTTC10200.011.0317864
Produced by FastQC (version 0.11.5)