Basic Statistics
Measure | Value |
---|---|
Filename | ERR1379010.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1496767 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4977 | 0.33251668429354736 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGACATGATCTCGTATGCCGTC | 3174 | 0.21205705363627073 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACATGATCTCGTATGCC | 1689 | 0.11284321474217429 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 725 | 0.0 | 34.135193 | 26 |
ATCGGAA | 730 | 0.0 | 33.901394 | 27 |
TCGGAAG | 770 | 0.0 | 33.601204 | 28 |
AGATCGG | 830 | 0.0 | 30.087952 | 25 |
TATGCCG | 515 | 0.0 | 29.712313 | 43 |
TGCCGAG | 1440 | 0.0 | 29.372644 | 20 |
AATGCCG | 1430 | 0.0 | 29.106058 | 18 |
CCGAGAT | 925 | 0.0 | 27.484283 | 22 |
ACCGGAC | 565 | 0.0 | 27.475674 | 27 |
ATGCCGA | 1545 | 0.0 | 27.230827 | 19 |
CGGAAGA | 980 | 0.0 | 26.630516 | 29 |
GAATGCC | 1595 | 0.0 | 26.519136 | 17 |
GACCGGA | 595 | 0.0 | 26.090345 | 26 |
ATGCCGT | 605 | 0.0 | 26.03619 | 44 |
GCCGAGA | 1580 | 0.0 | 25.915644 | 21 |
GAGATCG | 985 | 0.0 | 25.353298 | 24 |
CGTATGC | 615 | 0.0 | 25.245253 | 41 |
CCGGACA | 620 | 0.0 | 25.038317 | 28 |
CGGACAT | 625 | 0.0 | 24.838007 | 29 |
AGACCGG | 635 | 0.0 | 24.80116 | 25 |