FastQCFastQC Report
Mon 6 Jun 2016
ERR1379010.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379010.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1496767
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT49770.33251668429354736Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGACATGATCTCGTATGCCGTC31740.21205705363627073Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACATGATCTCGTATGCC16890.11284321474217429Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA7250.034.13519326
ATCGGAA7300.033.90139427
TCGGAAG7700.033.60120428
AGATCGG8300.030.08795225
TATGCCG5150.029.71231343
TGCCGAG14400.029.37264420
AATGCCG14300.029.10605818
CCGAGAT9250.027.48428322
ACCGGAC5650.027.47567427
ATGCCGA15450.027.23082719
CGGAAGA9800.026.63051629
GAATGCC15950.026.51913617
GACCGGA5950.026.09034526
ATGCCGT6050.026.0361944
GCCGAGA15800.025.91564421
GAGATCG9850.025.35329824
CGTATGC6150.025.24525341
CCGGACA6200.025.03831728
CGGACAT6250.024.83800729
AGACCGG6350.024.8011625