Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378966.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1075402 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 8697 | 0.8087208318377686 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTACTATCTCGTATGCCGTC | 4488 | 0.41733230922017994 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTACTATCTCGTATGCC | 1731 | 0.16096306311500258 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1203 | 0.1118651443832167 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 605 | 0.0 | 39.793182 | 43 |
ATGCCGT | 645 | 0.0 | 38.02306 | 44 |
TGCCGTC | 680 | 0.0 | 36.06599 | 45 |
ATCGGAA | 1140 | 0.0 | 34.735046 | 27 |
TCGGAAG | 1155 | 0.0 | 34.673534 | 28 |
GATCGGA | 1150 | 0.0 | 34.628647 | 26 |
AGATCGG | 1155 | 0.0 | 34.47874 | 25 |
CCGAGAT | 1275 | 0.0 | 31.763065 | 22 |
CGTATGC | 760 | 0.0 | 31.677467 | 41 |
CGTGTAC | 765 | 0.0 | 31.468964 | 29 |
TATCTCG | 770 | 0.0 | 31.266073 | 36 |
TCTCGTA | 770 | 0.0 | 31.266073 | 38 |
AATGCCG | 2080 | 0.0 | 31.260405 | 18 |
GAGATCG | 1275 | 0.0 | 31.23368 | 24 |
CTCGTAT | 785 | 0.0 | 30.955252 | 39 |
GACCGTG | 785 | 0.0 | 30.953814 | 26 |
TCGTATG | 780 | 0.0 | 30.865223 | 40 |
ATGCCGA | 2105 | 0.0 | 30.782257 | 19 |
CGAGATC | 1320 | 0.0 | 30.680235 | 23 |
ATCTCGT | 785 | 0.0 | 30.66863 | 37 |