ERR1378952.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378952.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	989435
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTACCATCTCGTATGCC	8873	0.8967744217659575	Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	4279	0.4324690353585632	Illumina Paired End PCR Primer 2 (100% over 35bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCTAC	1110	36.68824	32
CCGTCTA	1115	36.52372	31
GACCGTC	1105	36.44702	29
AGACCGT	1120	35.958893	28
CTCGTAT	1060	35.873528	42
CATCTCG	1075	35.37297	39
ACCGTCT	1145	35.370262	30
CGTATGC	1090	35.297253	44
ATCTCGT	1080	35.2092	40
GAGACCG	1145	35.17376	27
TCGTATG	1090	35.090836	43
TCTCGTA	1090	34.886185	41
GTATGCC	1105	34.818104	45
GTCTACC	1195	34.078617	33
TACCATC	1190	33.089054	36
CTACCAT	1275	31.763884	35
CGAGACC	1330	30.61951	26
ACCATCT	1305	29.828323	37
TCTACCA	1385	29.403572	34
AGATCGG	620	29.394403	17