ERR1378946.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378946.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	780552
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACGGAATCTCGTATGCC	8350	1.069755762588527	Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	4260	0.545767610614027	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	874	0.11197204029968535	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGACGG	1045	38.108856	32
CCGGACG	1050	37.927383	31
GGACGGA	1060	37.781837	33
ACCGGAC	1060	37.56958	30
GACGGAA	1060	37.56958	34
TCGTATG	1055	37.321106	43
TCTCGTA	1065	36.970673	41
ATCTCGT	1060	36.932808	40
AGACCGG	1085	36.911285	28
GACCGGA	1080	36.873844	29
CGGAATC	1070	36.797913	36
CGTATGC	1075	36.62676	44
GAGACCG	1105	36.446823	27
CTCGTAT	1085	36.289185	42
AATCTCG	1085	35.87445	39
GTATGCC	1095	35.752308	45
CGAGACC	1155	35.063835	26
ACGGAAT	1170	33.845093	35
GAATCTC	1205	32.30189	38
AGATCGG	610	30.244953	17