ERR1378943.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378943.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	945701
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGAGCATCTCGTATGCC	9460	1.0003161675836232	Illumina Paired End PCR Primer 2 (97% over 35bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	5034	0.532303550487945	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1164	0.12308330011282637	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGATGAG	1275	38.47009	32
ATCTCGT	1225	38.387257	40
CGTATGC	1245	38.31478	44
GACCGAT	1285	38.170715	29
CTCGTAT	1245	38.134052	42
TCTCGTA	1235	38.07844	41
CCGATGA	1295	37.875957	31
TCGTATG	1260	37.858654	43
CATCTCG	1250	37.619514	39
ACCGATG	1310	37.442265	30
AGACCGA	1320	37.15861	28
GAGACCG	1335	36.7411	27
GTATGCC	1305	36.553185	45
GATGAGC	1385	35.577156	33
CGAGACC	1435	34.494328	26
GAGCATC	1410	33.988922	36
AGATCGG	720	32.812073	17
GCATCTC	1450	32.430614	38
ATGAGCA	1535	32.100563	34
GATCGGA	755	31.588995	18