ERR1378940.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378940.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1217816
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAAGATCTCGTATGCC	14362	1.1793242985804095	Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	7608	0.6247249173931037	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1742	0.14304295558606556	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTCGA	1830	39.71163	31
CGTCGAA	1825	39.697147	32
GTCGAAG	1845	39.266823	33
TCTCGTA	1790	38.83933	41
TCGAAGA	1885	38.0755	34
CGTATGC	1860	37.984013	44
CTCGTAT	1850	37.946087	42
ACCGTCG	1920	37.850147	30
ATCTCGT	1850	37.701294	40
CGAAGAT	1880	37.698055	35
GACCGTC	1935	37.673008	29
AGACCGT	1940	37.575916	28
GAGACCG	1955	37.28761	27
GTATGCC	1895	37.28246	45
TCGTATG	1895	37.04499	43
GATCTCG	2005	34.786728	39
GAAGATC	2050	34.242622	36
CGAGACC	2140	34.064144	26
AGATCTC	2115	32.764732	38
AGATCGG	1185	32.46714	17