ERR1378926.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378926.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	996332
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCGCAAATCTCGTATGCC	13118	1.3166293966268272	Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	7643	0.7671137733205398	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1542	0.1547676878791407	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGCA	1745	36.4892	32
CGCAAAT	1740	36.335438	35
GCCGCAA	1760	36.17821	33
CCGCAAA	1775	35.87248	34
CCGCCGC	1785	35.671513	31
TCTCGTA	1755	35.383865	41
CGTATGC	1765	35.310867	44
GACCGCC	1785	35.29337	29
CTCGTAT	1760	35.283344	42
ACCGCCG	1800	35.249252	30
TCGTATG	1765	35.18339	43
AATCTCG	1775	35.11193	39
AGACCGC	1795	35.09675	28
ATCTCGT	1775	34.985172	40
GTATGCC	1785	34.66313	45
GAGACCG	1830	34.4255	27
AGATCGG	1150	34.238407	17
GATCGGA	1200	32.811806	18
GCAAATC	1965	32.403893	36
ATCGGAA	1205	32.30222	19