ERR1378924.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378924.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	937179
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCCTAATCTCGTATGCC	12224	1.3043399393285593	Illumina Paired End PCR Primer 2 (97% over 36bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	7689	0.8204409189706555	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1588	0.1694446845266486	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGATCC	1595	37.099655	31
TCTCGTA	1560	36.92439	41
CTCGTAT	1585	36.341988	42
CGATCCT	1625	36.276276	32
ATCTCGT	1590	36.227703	40
CGTATGC	1620	35.97158	44
ACCGATC	1640	35.944485	30
TCGTATG	1610	35.917427	43
GACCGAT	1645	35.835228	29
GTATGCC	1640	35.670097	45
AATCTCG	1625	35.44741	39
GAGACCG	1680	35.222588	27
GATCCTA	1680	35.08866	33
AGACCGA	1685	34.98454	28
CCTAATC	1710	33.81519	36
AGATCGG	1125	33.799397	17
CGAGACC	1790	33.05807	26
CCGAGAT	1190	32.520428	14
ATCGGAA	1170	32.499424	19
CTAATCT	1780	32.3607	37