ERR1378921.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378921.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	820415
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAACATATCTCGTATGCC	12060	1.4699877501020826	Illumina Paired End PCR Primer 2 (97% over 34bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	5407	0.6590566969155853	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1314	0.1601628444141075	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATCTCG	1455	36.030098	39
TCTCGTA	1455	35.87546	41
CTCGTAT	1480	35.421482	42
GTATGCC	1485	35.30437	45
CGAAACA	1535	35.17834	32
CCGAAAC	1530	34.999195	31
AGACCGA	1540	34.918026	28
ATCTCGT	1495	34.915585	40
CGTATGC	1510	34.868874	44
TCGTATG	1515	34.75379	43
GACCGAA	1550	34.69275	29
ACCGAAA	1560	34.326134	30
GAGACCG	1570	34.2508	27
CGAGACC	1680	32.276043	26
ATATCTC	1690	31.419395	38
ACATATC	1700	31.366926	36
CATATCT	1710	31.051914	37
AGATCGG	785	30.381466	17
ATCGGAA	815	29.26313	19
GATCGGA	825	29.181147	18