ERR1378920.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378920.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1093908
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTAGAGATCTCGTATGCC	10829	0.9899369965298728	Illumina Paired End PCR Primer 2 (97% over 35bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	6209	0.5675980064137021	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1435	0.13118104996032573	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	1475	35.84797	44
TCTCGTA	1470	35.816837	41
CCGGTAG	1490	35.787464	31
CTCGTAT	1480	35.728493	42
CGGTAGA	1500	35.54888	32
TCGTATG	1490	35.487083	43
ACCGGTA	1500	35.398888	30
GACCGGT	1500	35.398888	29
ATCTCGT	1515	34.75297	40
AGACCGG	1525	34.67104	28
GTATGCC	1555	34.0037	45
GAGACCG	1575	33.713223	27
GATCTCG	1665	31.892345	39
AGATCGG	1070	31.751337	17
GAGATCT	1710	30.921492	37
CGAGACC	1710	30.920078	26
GATCGGA	1100	30.885391	18
GGTAGAG	1745	30.686712	33
AGATCTC	1735	30.346252	38
AGAGATC	1785	30.000427	36