ERR1378919.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378919.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	721036
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCCGCGATCTCGTATGCC	10864	1.5067208849488791	Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	6432	0.8920497728268769	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1261	0.17488724557442348	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCCGCGA	1370	36.951874	34
CCGCGAT	1370	36.787643	35
GGCCGCG	1385	36.55167	33
CGGCCGC	1385	36.389217	32
CCGGCCG	1385	36.389217	31
ATCTCGT	1350	36.33266	40
CGCGATC	1380	36.194984	36
TCTCGTA	1365	36.098232	41
CTCGTAT	1375	35.8357	42
TCGTATG	1380	35.70586	43
GAGACCG	1410	35.58445	27
GACCGGC	1415	35.458706	29
AGACCGG	1425	35.367767	28
CGTATGC	1410	35.26531	44
ACCGGCC	1430	35.244106	30
GCGATCT	1405	35.070526	37
GTATGCC	1415	34.981686	45
GATCTCG	1460	33.903484	39
AGATCGG	895	33.183743	17
CGATCTC	1505	33.039257	38