ERR1378917.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378917.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	956228
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGTGGATCTCGTATGCC	12544	1.3118210301308892	Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	7289	0.7622659031109735	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1631	0.17056601563643817	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	1520	36.857994	42
CGGAGTG	1565	36.66079	32
TCTCGTA	1535	36.49782	41
CCGGAGT	1580	36.31274	31
ATCTCGT	1555	35.8837	40
CGTATGC	1560	35.768692	44
GACCGGA	1610	35.63611	29
ACCGGAG	1620	35.555016	30
TCGTATG	1580	35.458324	43
AGACCGG	1630	35.198856	28
GTATGCC	1580	35.17352	45
GAGACCG	1640	34.847034	27
GGATCTC	1635	34.265537	38
GATCTCG	1650	33.954033	39
AGATCGG	1105	32.375076	17
CGAGACC	1800	32.37451	26
GATCGGA	1120	31.94148	18
TGGATCT	1785	31.764227	37
AGTGGAT	1825	31.684452	35
ATCGGAA	1130	31.658815	19