ERR1378916.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378916.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1091000
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACGGATCTCGTATGCC	11400	1.0449129239230064	Illumina Paired End PCR Primer 2 (97% over 35bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	6956	0.6375802016498625	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1645	0.15077910174152154	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGATACG	1450	37.551186	32
TCTCGTA	1430	36.821033	41
GATACGG	1480	36.790016	33
CCGATAC	1485	36.66614	31
CTCGTAT	1445	36.59453	42
ACGGATC	1450	36.466667	36
ATACGGA	1470	36.428055	34
CGGATCT	1435	36.377457	37
ATCTCGT	1440	36.09489	40
TACGGAT	1475	35.999485	35
TCGTATG	1475	35.848587	43
CGTATGC	1490	35.78972	44
ACCGATA	1555	35.015575	30
GTATGCC	1515	34.902092	45
AGACCGA	1565	34.791836	28
GACCGAT	1575	34.57094	29
GAGACCG	1580	34.461533	27
AGATCGG	1090	33.85273	17
GGATCTC	1605	32.244007	38
GATCGGA	1155	32.1424	18