ERR1378912.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378912.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	796621
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCGTCCATCTCGTATGCC	10142	1.2731273717363716	Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	6681	0.8386673210974854	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1184	0.14862776652887633	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGCCGT	1235	0.0	38.075806	31
CGCCGTC	1230	0.0	38.047665	32
CGTCCAT	1225	0.0	38.019295	35
CATCTCG	1220	0.0	37.80627	39
TCTCGTA	1235	0.0	37.529263	41
CGTATGC	1240	0.0	37.377934	44
CCGTCCA	1255	0.0	37.28974	34
GTATGCC	1240	0.0	37.196487	45
ACCGCCG	1260	0.0	37.14177	30
GCCGTCC	1260	0.0	37.14177	33
ATCTCGT	1245	0.0	37.047108	40
CTCGTAT	1255	0.0	36.931187	42
GACCGCC	1275	0.0	36.704807	29
AGACCGC	1280	0.0	36.561428	28
TCGTATG	1275	0.0	36.35188	43
GAGACCG	1300	0.0	35.998947	27
CGTCCGA	25	0.0021070242	35.998943	10
GTCCATC	1290	0.0	35.754765	36
AGATCGG	910	0.0	35.108864	17
CGAGACC	1350	0.0	34.665653	26