ERR1378910.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378910.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	802360
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCACTTATCTCGTATGCC	8321	1.037065656313874	Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	4847	0.6040929258686873	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1127	0.14046064110872925	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	1070	37.42804	44
CGGCACT	1085	37.325325	32
CCGGCAC	1090	37.15411	31
TCTCGTA	1065	36.974598	41
TCGTATG	1075	36.835373	43
TATCTCG	1070	36.80182	39
ACCGGCA	1105	36.649757	30
GACCGGC	1105	36.649757	29
GTATGCC	1095	36.57352	45
AGACCGG	1115	36.32106	28
ATCTCGT	1085	36.293037	40
CTCGTAT	1080	36.252712	42
AGATCGG	745	35.03181	17
GAGACCG	1165	34.762215	27
GCACTTA	1185	34.365376	34
GATCGGA	770	33.894413	18
GGCACTT	1210	33.841286	33
ACTTATC	1200	33.3775	36
CGAGACC	1225	33.243244	26
ATCGGAA	795	32.828552	19