ERR1378909.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378909.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	953584
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCCATGATCTCGTATGCC	11451	1.2008381013104248	Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	6083	0.6379091931072669	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1405	0.1473388815248578	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCCAT	1525	37.769833	32
CTCGTAT	1490	37.601986	42
TCTCGTA	1485	37.425552	41
ATCTCGT	1490	37.29996	40
GTATGCC	1495	37.173264	45
CGTATGC	1520	36.85791	44
TCGTATG	1530	36.61701	43
GACCGCC	1575	36.57079	29
AGACCGC	1600	35.99937	28
CCGCCCA	1610	35.91552	31
ACCGCCC	1605	35.887222	30
GAGACCG	1610	35.775772	27
AGATCGG	1005	34.47701	17
GATCTCG	1625	34.33966	39
GATCGGA	1065	32.745907	18
GCCCATG	1780	32.73819	33
CGAGATC	1070	32.38261	15
CGAGACC	1795	32.339268	26
ATCGGAA	1095	32.25971	19
GAGATCG	1075	32.23199	16