ERR1378908.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378908.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	835335
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAATTATCTCGTATGCC	9983	1.1950893952725554	Illumina Paired End PCR Primer 2 (97% over 35bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	5439	0.6511160193215896	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1307	0.15646417305631874	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATCTCG	1200	38.0622	39
CGATAAT	1225	37.836433	32
ATCTCGT	1215	37.592293	40
CCGATAA	1235	37.530064	31
CGTATGC	1230	37.499702	44
TCTCGTA	1220	37.438225	41
CTCGTAT	1230	37.316776	42
TCGTATG	1230	37.316776	43
ACCGATA	1245	37.22862	30
GACCGAT	1245	37.047897	29
GAGACCG	1265	36.817886	27
AGACCGA	1260	36.78542	28
GTATGCC	1245	36.686455	45
CGAGACC	1420	32.95748	26
CGAGATC	845	31.419868	15
GATAATT	1515	31.18787	33
AGATCGG	845	30.88733	17
CCGAGAT	860	30.871847	14
ATCGGAA	860	30.348595	19
GATCGGA	870	29.99976	18