ERR1378907.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378907.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	779353
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACGATAATCTCGTATGCC	8944	1.1476186015836214	Illumina Paired End PCR Primer 2 (97% over 34bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	5155	0.6614460969547817	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1065	0.13665181246495492	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGACGA	1095	35.341103	31
TCTCGTA	1085	35.256626	41
CTCGTAT	1090	35.0994	42
CGACGAT	1110	35.06622	32
GACGATA	1110	35.06622	33
CGATAAT	1120	34.753124	35
ACGATAA	1125	34.598667	34
CGTATGC	1120	34.556675	44
ACCGACG	1125	34.398674	30
AGACCGA	1130	34.246468	28
GACCGAC	1140	33.946064	29
TCGTATG	1140	33.753033	43
ATCTCGT	1135	33.70347	40
GAGACCG	1160	33.360783	27
GTATGCC	1180	32.799557	45
AATCTCG	1180	32.799557	39
GATAATC	1265	31.129276	36
AGATCGG	840	31.070232	17
GATCGGA	855	30.788288	18
CGAGACC	1335	29.998848	26