ERR1378906.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378906.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	896560
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGACTATCTCGTATGCC	10259	1.1442625144998662	Illumina Paired End PCR Primer 2 (97% over 34bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	6174	0.688632104934416	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1122	0.12514499866155082	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGAAG	1415	37.36661	30
GACCGAA	1415	37.207603	29
TCGTATG	1405	37.154224	43
TCTCGTA	1400	37.126194	41
TATCTCG	1395	37.09797	39
ATCTCGT	1410	37.02247	40
CTCGTAT	1405	36.996136	42
CCGAAGA	1450	36.464657	31
GAGACCG	1445	36.435127	27
GTATGCC	1440	36.407425	45
CGAAGAC	1460	36.369007	32
CGTATGC	1455	36.341377	44
AGACCGA	1450	36.30949	28
GACTATC	1465	35.786137	36
AGATCGG	885	34.321228	17
CGAGACC	1580	33.4644	26
GAAGACT	1600	33.186718	33
AGACTAT	1595	33.14969	35
AAGACTA	1615	32.878483	34
ACTATCT	1585	32.650894	37