ERR1378905.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378905.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1150022
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGGCTACATCTCGTATGCC	8453	0.7350294168285476	Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	5074	0.4412089507852894	Illumina Paired End PCR Primer 2 (100% over 35bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	1215	35.554317	44
CTCGTAT	1210	35.515293	42
CGGGCTA	1235	35.3429	32
AGATCGG	830	35.23974	17
TCTCGTA	1230	34.754887	41
TCGTATG	1245	34.697586	43
AGACCGG	1260	34.64165	28
GACCGGG	1275	34.234104	29
ACCGGGC	1285	33.967693	30
CATCTCG	1255	33.88328	39
ATCTCGT	1265	33.793293	40
GTATGCC	1280	33.74883	45
GAGACCG	1305	33.61952	27
GGGCTAC	1305	33.447113	33
GATCGGA	885	33.305374	18
CCGGGCT	1330	32.818405	31
GCTACAT	1355	31.88081	35
ATCGGAA	920	31.793755	19
GGCTACA	1395	31.289234	34
TCGGAAG	940	31.11729	20