Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378904.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1079765 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGTCAATCTCGTATGCC | 13432 | 1.243974383314888 | Illumina Paired End PCR Primer 2 (97% over 38bp) |
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 7436 | 0.6886683676540729 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1702 | 0.15762689103647554 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGATGT | 1830 | 0.0 | 36.393105 | 31 |
CGATGTC | 1835 | 0.0 | 36.171326 | 32 |
TCTCGTA | 1805 | 0.0 | 35.52599 | 41 |
CTCGTAT | 1815 | 0.0 | 35.330254 | 42 |
ATCTCGT | 1825 | 0.0 | 35.13666 | 40 |
GACCGAT | 1895 | 0.0 | 35.026062 | 29 |
ACCGATG | 1905 | 0.0 | 34.960304 | 30 |
TCGTATG | 1835 | 0.0 | 34.94518 | 43 |
AATCTCG | 1860 | 0.0 | 34.71742 | 39 |
CGTATGC | 1855 | 0.0 | 34.689705 | 44 |
GTATGCC | 1840 | 0.0 | 34.605656 | 45 |
AGACCGA | 1915 | 0.0 | 34.542763 | 28 |
GAGACCG | 1935 | 0.0 | 34.069454 | 27 |
GTCAATC | 1945 | 0.0 | 34.009968 | 36 |
AGATCGG | 1200 | 0.0 | 33.187195 | 17 |
GATGTCA | 2055 | 0.0 | 32.40846 | 33 |
GATCGGA | 1240 | 0.0 | 32.11664 | 18 |
TGTCAAT | 2090 | 0.0 | 31.54277 | 35 |
ATCGGAA | 1250 | 0.0 | 31.49971 | 19 |
TCGGAAG | 1260 | 0.0 | 31.428284 | 20 |