FastQCFastQC Report
Mon 6 Jun 2016
ERR1378904.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378904.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1079765
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGTCAATCTCGTATGCC134321.243974383314888Illumina Paired End PCR Primer 2 (97% over 38bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC74360.6886683676540729Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT17020.15762689103647554Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATGT18300.036.39310531
CGATGTC18350.036.17132632
TCTCGTA18050.035.5259941
CTCGTAT18150.035.33025442
ATCTCGT18250.035.1366640
GACCGAT18950.035.02606229
ACCGATG19050.034.96030430
TCGTATG18350.034.9451843
AATCTCG18600.034.7174239
CGTATGC18550.034.68970544
GTATGCC18400.034.60565645
AGACCGA19150.034.54276328
GAGACCG19350.034.06945427
GTCAATC19450.034.00996836
AGATCGG12000.033.18719517
GATGTCA20550.032.4084633
GATCGGA12400.032.1166418
TGTCAAT20900.031.5427735
ATCGGAA12500.031.4997119
TCGGAAG12600.031.42828420