ERR1378901.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378901.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	658337
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCAAGGATCTCGTATGCC	7936	1.2054616404668126	Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	4430	0.6729076445650176	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1025	0.1556953353677524	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGCAAG	1035	35.65187	32
AGATCGG	650	35.307392	17
CCGGCAA	1050	35.14256	31
GACCGGC	1070	34.69597	29
AGACCGG	1075	34.32529	28
TCGTATG	1045	34.23416	43
ACCGGCA	1080	34.166378	30
ATCTCGT	1050	34.07114	40
TCTCGTA	1055	33.909664	41
CGTATGC	1050	33.856857	44
GTATGCC	1050	33.856857	45
CGAGATC	685	33.50337	15
CTCGTAT	1070	33.434296	42
GAGACCG	1105	33.393383	27
TCGGAAG	700	32.78544	20
GATCTCG	1110	32.63486	39
ATCGGAA	705	32.552914	19
GATCGGA	710	32.32367	18
GAGATCG	710	32.32367	16
GGATCTC	1125	31.99973	38