ERR1378893.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378893.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	793779
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAAAAGATCTCGTATGCC	11211	1.4123578477132803	Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	4279	0.5390669191298838	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	881	0.11098807098701277	Illumina Paired End PCR Primer 2 (96% over 30bp)
GGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAAAAGATCTCGTATGCCG	873	0.10998023379303308	Illumina Paired End PCR Primer 2 (96% over 32bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	1530	38.822876	42
TCTCGTA	1535	38.69642	41
CGTATGC	1555	38.198715	44
TCGTATG	1565	37.954636	43
CGCAAAA	1595	37.805008	32
CCGCAAA	1595	37.663944	31
ATCTCGT	1585	37.47571	40
GTATGCC	1585	37.33376	45
GACCGCA	1615	37.197517	29
AGACCGC	1620	37.08271	28
ACCGCAA	1635	36.742504	30
GAGACCG	1635	36.742504	27
CGAGACC	1715	35.29095	26
GATCTCG	1700	34.94059	39
AAAGATC	1800	33.37444	36
GCAAAAG	1840	32.771187	33
AGATCTC	1820	32.76044	38
AAGATCT	1855	32.50619	37
AGATCGG	665	31.803978	17
GATCGGA	700	30.535202	18