ERR1378892.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378892.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	938062
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCGCTATCTCGTATGCC	13422	1.4308222697433643	Illumina Paired End PCR Primer 2 (97% over 36bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	5697	0.6073159343412269	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1345	0.14338071470755664	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGAGCG	1670	39.340897	31
CGCTATC	1675	39.22346	36
CTCGTAT	1650	39.138035	42
CGAGCGC	1680	39.106724	32
TATCTCG	1665	38.918503	39
GCGCTAT	1695	38.76065	35
TCTCGTA	1670	38.66725	41
TCGTATG	1675	38.553886	43
AGCGCTA	1710	38.55222	34
ATCTCGT	1675	38.551826	40
CGTATGC	1700	37.986916	44
GACCGAG	1750	37.671024	29
AGACCGA	1750	37.671024	28
ACCGAGC	1745	37.65003	30
GAGCGCT	1770	37.245365	33
GAGACCG	1770	37.118248	27
GTATGCC	1740	36.984337	45
GCTATCT	1830	35.53241	37
CGAGACC	1910	34.63314	26
CTATCTC	1905	34.133495	38