ERR1378891.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378891.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1640638
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACCCCATCTCGTATGCC	14693	0.8955662370370552	Illumina Paired End PCR Primer 2 (97% over 36bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	7586	0.46238109808501326	Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1780	0.10849437840644921	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

$Kmer graph$

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGAACC	1910	36.9885	31
ATCTCGT	1865	36.557285	40
CGAACCC	1940	36.532494	32
TCTCGTA	1885	36.169415	41
ACCGAAC	1955	36.137104	30
CTCGTAT	1890	36.073727	42
GACCGAA	1975	35.771156	29
CGTATGC	1915	35.599533	44
AGACCGA	1990	35.501526	28
GAGACCG	1995	35.41255	27
CATCTCG	1935	35.118515	39
TCGTATG	1955	34.98624	43
GTATGCC	1980	34.544495	45
AGATCGG	1265	33.082085	17
GAACCCC	2170	32.764065	33
GATCGGA	1290	32.44096	18
ATCGGAA	1300	32.191414	19
CGAGACC	2235	31.811197	26
TCGGAAG	1320	31.703663	20
CGAGATC	1455	28.916723	15