FastQCFastQC Report
Mon 6 Jun 2016
ERR1378881.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378881.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences876416
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT36460.4160124872206806Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTTCATCTCGTATGCCGTC23200.2647144734920403Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTTCATCTCGTATGCC14820.16909778004965678Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3550.038.0221943
ATGCCGT3850.035.0594244
TGCCGTC4250.031.75971245
GATCGGA5150.031.01277226
AGATCGG5200.030.71632425
ATCGGAA5300.030.55948627
TCGGAAG5750.030.1239828
AATGCCG10900.028.06737918
ATGCCGA11000.027.81380819
TGCCGAG11150.027.43963220
CCGAGAT5950.026.84451922
CTCGTAT5200.026.39008139
TCTCGTA5200.025.95597638
ACCGTAG5200.025.95597627
GAATGCC12000.025.86945717
CCGTAGT5300.025.4662428
GCCGAGA11650.025.2964521
CGTATGC5350.025.22967741
GACCGTA5350.025.2282426
AGACCGT5450.025.17952725