FastQCFastQC Report
Mon 6 Jun 2016
ERR1378836.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378836.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1048507
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT33490.3194065466420348Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGAAGATCTCGTATGCCGTC24870.23719441071924172Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGAAGATCTCGTATGCC20650.1969467061259486Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3300.036.1376343
TCGGAAG4150.035.23547428
ATCGGAA4000.034.86956827
ATGCCGT3750.032.40113444
AGATCGG4400.031.69960625
TGCCGTC3800.031.38267745
GATCGGA4450.031.3434326
AATGCCG9650.027.27554118
ATGCCGA10000.026.32090219
TGCCGAG10400.025.30855620
CCGAGAT5450.024.76678522
CGAGATC5900.023.2590923
GCCGAGA11000.023.11003721
GAATGCC11300.023.09374817
TCTCGTA5300.022.92095838
CTCGTAT5250.022.7150839
TCGTATG5350.022.29049940
CGTATGC5450.021.881541
GAGATCG6400.021.7934824
GACCGAA5500.021.26941526