Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378836.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1048507 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3349 | 0.3194065466420348 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGAAGATCTCGTATGCCGTC | 2487 | 0.23719441071924172 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGAAGATCTCGTATGCC | 2065 | 0.1969467061259486 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 330 | 0.0 | 36.13763 | 43 |
TCGGAAG | 415 | 0.0 | 35.235474 | 28 |
ATCGGAA | 400 | 0.0 | 34.869568 | 27 |
ATGCCGT | 375 | 0.0 | 32.401134 | 44 |
AGATCGG | 440 | 0.0 | 31.699606 | 25 |
TGCCGTC | 380 | 0.0 | 31.382677 | 45 |
GATCGGA | 445 | 0.0 | 31.34343 | 26 |
AATGCCG | 965 | 0.0 | 27.275541 | 18 |
ATGCCGA | 1000 | 0.0 | 26.320902 | 19 |
TGCCGAG | 1040 | 0.0 | 25.308556 | 20 |
CCGAGAT | 545 | 0.0 | 24.766785 | 22 |
CGAGATC | 590 | 0.0 | 23.25909 | 23 |
GCCGAGA | 1100 | 0.0 | 23.110037 | 21 |
GAATGCC | 1130 | 0.0 | 23.093748 | 17 |
TCTCGTA | 530 | 0.0 | 22.920958 | 38 |
CTCGTAT | 525 | 0.0 | 22.71508 | 39 |
TCGTATG | 535 | 0.0 | 22.290499 | 40 |
CGTATGC | 545 | 0.0 | 21.8815 | 41 |
GAGATCG | 640 | 0.0 | 21.79348 | 24 |
GACCGAA | 550 | 0.0 | 21.269415 | 26 |