Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378794.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 912120 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCTGAATCTCGTATGCCGTC | 1754 | 0.192299258869447 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCTGAATCTCGTATGCC | 1153 | 0.12640880585887823 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 190 | 0.0 | 41.444336 | 43 |
ATGCCGT | 225 | 0.0 | 34.997444 | 44 |
TGCCGTC | 235 | 0.0 | 33.508186 | 45 |
CGTATGC | 315 | 0.0 | 24.998173 | 41 |
CTCGTAT | 315 | 0.0 | 24.998173 | 39 |
TCTCGTA | 315 | 0.0 | 24.998173 | 38 |
ATCTCGT | 325 | 0.0 | 24.921255 | 37 |
ACCGTTC | 320 | 0.0 | 24.607576 | 27 |
AGACCGT | 330 | 0.0 | 24.543661 | 25 |
GACCGTT | 330 | 0.0 | 23.861893 | 26 |
TCGTATG | 330 | 0.0 | 23.861893 | 40 |
GAGACCG | 360 | 0.0 | 22.498356 | 24 |
AATCTCG | 350 | 0.0 | 22.498354 | 36 |
CCGTTCT | 350 | 0.0 | 22.498354 | 28 |
GAGCGGT | 480 | 0.0 | 22.040512 | 3 |
CGTTCTG | 370 | 0.0 | 21.890291 | 29 |
CGGTTCA | 500 | 0.0 | 21.607897 | 6 |
GCGGTTC | 490 | 0.0 | 21.589523 | 5 |
AATGCCG | 470 | 0.0 | 21.540977 | 18 |
AGCGGTT | 500 | 0.0 | 21.157732 | 4 |