FastQCFastQC Report
Mon 6 Jun 2016
ERR1378794.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378794.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences912120
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCTGAATCTCGTATGCCGTC17540.192299258869447Illumina Paired End PCR Primer 2 (97% over 34bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCTGAATCTCGTATGCC11530.12640880585887823Illumina Paired End PCR Primer 2 (97% over 37bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1900.041.44433643
ATGCCGT2250.034.99744444
TGCCGTC2350.033.50818645
CGTATGC3150.024.99817341
CTCGTAT3150.024.99817339
TCTCGTA3150.024.99817338
ATCTCGT3250.024.92125537
ACCGTTC3200.024.60757627
AGACCGT3300.024.54366125
GACCGTT3300.023.86189326
TCGTATG3300.023.86189340
GAGACCG3600.022.49835624
AATCTCG3500.022.49835436
CCGTTCT3500.022.49835428
GAGCGGT4800.022.0405123
CGTTCTG3700.021.89029129
CGGTTCA5000.021.6078976
GCGGTTC4900.021.5895235
AATGCCG4700.021.54097718
AGCGGTT5000.021.1577324