ERR1378754.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378754.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	291922
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTGAATCTCGTATGCC	345	0.11818225416378347	Illumina Paired End PCR Primer 2 (97% over 35bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACCGGT	45	3.8198777E-10	44.998974	29
CGTATGC	50	1.0750227E-9	40.499073	44
CTCGTAT	50	1.0750227E-9	40.499073	42
CGGTTCA	50	1.0750227E-9	40.499073	9
AGACCGG	50	1.0750227E-9	40.499073	28
TCGTATG	50	1.0750227E-9	40.499073	43
ACCGGTG	55	2.73576E-9	36.81734	30
GCGGTTC	55	2.73576E-9	36.81734	8
GTATGCC	55	2.73576E-9	36.81734	45
TCTCGTA	55	2.73576E-9	36.81734	41
CCGAGAC	55	2.73576E-9	36.81734	25
ATCTCGT	60	6.3992047E-9	33.74923	40
CCGGTGT	60	6.3992047E-9	33.74923	31
AGAGCGG	60	6.3992047E-9	33.74923	5
GAGACCG	70	8.094503E-10	32.142124	27
CGGAAGA	65	1.3917088E-8	31.16381	1
AGCGGTT	65	1.3962563E-8	31.153135	7
GAGCGGT	65	1.3962563E-8	31.153135	6
ACCACGC	45	3.482564E-5	29.999315	9
AATGCCG	70	2.8712748E-8	28.927912	21