FastQCFastQC Report
Mon 6 Jun 2016
ERR1378747.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378747.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences772655
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCTAT300.00514655229.99961318
CTCGTAT507.156045E-526.99965142
TCTCGTA507.156045E-526.99965141
TCGTATG507.156045E-526.99965143
CGGCTAG507.156045E-526.99965132
AAAGCGC801.05232175E-725.3138085
CGTATGC551.3677558E-424.54513744
AATGCCG551.3677558E-424.54513721
GCCTCGA602.4667097E-422.4997122
GAGACCG702.7017824E-522.49970827
ATCTTCG1401.364242E-1020.893945
ACCGGCT654.2368687E-420.76896330
CGTGAAC654.2368687E-420.76896335
TTCGTTG1109.961332E-820.4569283
ATGGCGT550.00393568220.4542831
CGGTTCA550.00393568220.454289
AGCGCTC550.00393568220.454287
AAGCGCT1009.042542E-720.2510496
CGGAAGA706.975164E-419.287961
GAGCGGT706.978203E-419.2867136
Produced by FastQC (version 0.11.5)