FastQCFastQC Report
Mon 6 Jun 2016
ERR1378734.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378734.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences729579
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTTCA552.746674E-936.8170629
CTCGTAT504.876165E-835.998942
GCGGTTC551.1263728E-732.728528
CGGCATA551.1270458E-732.72627632
TCGTATG602.4175824E-729.99908643
CGGAAGA654.861831E-727.6971591
GAGCGGT709.285541E-725.718796
GAGACCG709.3022027E-725.71350127
TCTCGTA709.3022027E-725.71350141
AGACCGG709.3022027E-725.71350128
CCGAGAC709.3022027E-725.71350125
CGTATGC801.0529948E-725.3117344
AGAGCGG802.9677667E-622.5039425
ACCGGCA802.9730709E-622.49931530
AATGCCG802.9730709E-622.49931521
ATGCCGA802.9730709E-622.49931522
CTCGCTG500.002264224222.49931311
AAGAGCG855.0204253E-621.1801824
AGCGGTT855.0263916E-621.1772777
TGCCGAG855.0293766E-621.17582523