Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378734.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 729579 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGTTCA | 55 | 2.746674E-9 | 36.817062 | 9 |
CTCGTAT | 50 | 4.876165E-8 | 35.9989 | 42 |
GCGGTTC | 55 | 1.1263728E-7 | 32.72852 | 8 |
CGGCATA | 55 | 1.1270458E-7 | 32.726276 | 32 |
TCGTATG | 60 | 2.4175824E-7 | 29.999086 | 43 |
CGGAAGA | 65 | 4.861831E-7 | 27.697159 | 1 |
GAGCGGT | 70 | 9.285541E-7 | 25.71879 | 6 |
GAGACCG | 70 | 9.3022027E-7 | 25.713501 | 27 |
TCTCGTA | 70 | 9.3022027E-7 | 25.713501 | 41 |
AGACCGG | 70 | 9.3022027E-7 | 25.713501 | 28 |
CCGAGAC | 70 | 9.3022027E-7 | 25.713501 | 25 |
CGTATGC | 80 | 1.0529948E-7 | 25.31173 | 44 |
AGAGCGG | 80 | 2.9677667E-6 | 22.503942 | 5 |
ACCGGCA | 80 | 2.9730709E-6 | 22.499315 | 30 |
AATGCCG | 80 | 2.9730709E-6 | 22.499315 | 21 |
ATGCCGA | 80 | 2.9730709E-6 | 22.499315 | 22 |
CTCGCTG | 50 | 0.0022642242 | 22.499313 | 11 |
AAGAGCG | 85 | 5.0204253E-6 | 21.180182 | 4 |
AGCGGTT | 85 | 5.0263916E-6 | 21.177277 | 7 |
TGCCGAG | 85 | 5.0293766E-6 | 21.175825 | 23 |