FastQCFastQC Report
Mon 6 Jun 2016
ERR1378721.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378721.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences947703
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGACA300.00514763529.99901643
ATACGCC300.00514763529.99901617
CGGAAGC901.8657092E-417.49942625
ACGGAAG800.001710921316.87444724
CGTTGGA1104.6311558E-516.365695
ACCACGC1553.616764E-614.5156539
TCTTCGT1352.6507283E-413.3335997
CCTTCGT1250.002247111612.6029111
CGCCCAG1250.00225156912.59958613
GAGCCGA1751.8043761E-411.57104940
ACTAGAC5450.011.55925419
CCACGCC1953.84312E-511.53808210
TCGTTGG1600.001106416311.2514124
CGCCACC1400.00525008111.2514115
CACGCCC1600.001107882611.24963111
GAACCCG1802.3439965E-411.24963115
TAGACAG7500.011.09963621
GAAGCAT6950.011.00683327
TTCGTTG1650.00142889210.9121873
AGCCGAG1650.00143267310.90873241
Produced by FastQC (version 0.11.5)