FastQCFastQC Report
Mon 6 Jun 2016
ERR1378704.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378704.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1231045
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGACCA1050.038.5704232
ACCGGAC1150.035.2164730
CTCGTAT1100.034.77181642
GACCGGA1300.034.6144829
AGACCGG1350.033.33246228
TCGTATG1200.031.87416543
CCGGACC1300.031.15303231
GAGCGGT1400.028.9348686
GCGGTTC1400.028.926648
CGTATGC1350.028.33259244
TCTCGTA1350.028.33259241
AGCGGTT1450.027.9291697
GAGACCG1800.026.24931327
AGAGCGG1600.025.3180085
CCGAGAC1700.025.14640225
AAGAGCG1650.024.5507974
ATCTCGT1700.023.82290640
CGGTTCA1750.023.1413129
CGGAAGA1950.021.9340861
ATGCCGA2050.019.7547822
Produced by FastQC (version 0.11.5)