Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378696.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1023883 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATGC | 80 | 1.0004442E-10 | 30.938776 | 44 |
GACCGCC | 80 | 1.0004442E-10 | 30.935755 | 29 |
CTCGTAT | 85 | 2.0372681E-10 | 29.120272 | 42 |
TCTCGTA | 85 | 2.0372681E-10 | 29.120272 | 41 |
TCGTATG | 85 | 2.0372681E-10 | 29.11885 | 43 |
ACCGCCA | 85 | 2.0372681E-10 | 29.116005 | 30 |
AGACCGC | 90 | 3.965397E-10 | 27.49845 | 28 |
AGCGGTT | 90 | 3.965397E-10 | 27.497105 | 7 |
GCGGTTC | 100 | 1.3460522E-9 | 24.747395 | 8 |
CGGTTCA | 105 | 2.3683242E-9 | 23.568949 | 9 |
AAGAGCG | 115 | 2.6375346E-10 | 23.482672 | 4 |
GAGCGGT | 110 | 4.0417945E-9 | 22.504225 | 6 |
AGAGCGG | 120 | 4.5110937E-10 | 22.504225 | 5 |
TGCCGAG | 120 | 4.5292836E-10 | 22.497631 | 23 |
ATCTCGT | 125 | 7.512426E-10 | 21.601946 | 40 |
CCGAGAC | 115 | 6.7757355E-9 | 21.519474 | 25 |
GGCGACA | 75 | 4.6040055E-5 | 20.998816 | 29 |
ATGCCGA | 120 | 1.1061275E-8 | 20.622828 | 22 |
AATGCCG | 125 | 1.7689672E-8 | 19.797915 | 21 |
CGGAAGA | 130 | 2.7546776E-8 | 19.048552 | 1 |