FastQCFastQC Report
Mon 6 Jun 2016
ERR1378696.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378696.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1023883
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC801.0004442E-1030.93877644
GACCGCC801.0004442E-1030.93575529
CTCGTAT852.0372681E-1029.12027242
TCTCGTA852.0372681E-1029.12027241
TCGTATG852.0372681E-1029.1188543
ACCGCCA852.0372681E-1029.11600530
AGACCGC903.965397E-1027.4984528
AGCGGTT903.965397E-1027.4971057
GCGGTTC1001.3460522E-924.7473958
CGGTTCA1052.3683242E-923.5689499
AAGAGCG1152.6375346E-1023.4826724
GAGCGGT1104.0417945E-922.5042256
AGAGCGG1204.5110937E-1022.5042255
TGCCGAG1204.5292836E-1022.49763123
ATCTCGT1257.512426E-1021.60194640
CCGAGAC1156.7757355E-921.51947425
GGCGACA754.6040055E-520.99881629
ATGCCGA1201.1061275E-820.62282822
AATGCCG1251.7689672E-819.79791521
CGGAAGA1302.7546776E-819.0485521