FastQCFastQC Report
Mon 6 Jun 2016
ERR1378695.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378695.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1195658
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTC1250.034.1964728
AGACCGT1400.030.53384228
CCGAGAC1500.029.9981625
AGCGGTT1450.029.4797177
ATGCCGA1500.028.49705922
CGTATGC1550.027.58010544
GACCGTG1550.027.57895329
TCTCGTA1600.026.71711241
CTCGTAT1650.025.90750342
TGCCGAG1650.025.90750323
TCGTATG1700.025.14656843
TATCTCG1700.025.14551739
CGGAAGA1800.023.7684231
GAGACCG1800.023.74854327
CGGTTCA1850.023.1057249
GAGCGGT1900.022.5089746
CCGTGTG2050.021.94987331
AGAGCGG2100.021.437125
AAGAGCG2050.020.8619774
AATGCCG2050.020.8515121
Produced by FastQC (version 0.11.5)