FastQCFastQC Report
Mon 6 Jun 2016
ERR1378694.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378694.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences833455
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT1000.033.74748242
TCGTATG1100.030.67952743
GCGGTTC1400.030.5334348
GAGCGGT1350.030.0103656
ACCCGTG300.005148334429.99776312
ACCGGTT1050.029.9977630
CCGGTTC1050.029.9977631
CGGTTCA1400.028.9264139
CGGTTCT1100.028.63422632
AGCGGTT1450.027.928957
GACCGGT1150.027.38926129
TCTCGTA1150.027.38926141
AGAGCGG1500.027.0093275
GTATGCC1200.026.24804145
AGACCGG1200.026.24804128
AATGCCG1400.025.71236621
AAGAGCG1650.024.5539324
CGTATGC1301.8189894E-1224.22896244
CGGAAGA1600.023.9259951
ATGCCGA1550.023.22407222
Produced by FastQC (version 0.11.5)