FastQCFastQC Report
Mon 6 Jun 2016
ERR1378693.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378693.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1084684
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAT1250.037.79775629
CTCGTAT1200.037.49777242
TCGTATG1350.036.66448643
CGTATGC1300.036.34399444
ACCGATT1300.036.34399430
CGGTTCA1350.034.9963079
CCGATTC1400.033.74799331
TCTCGTA1350.033.33135241
GAGCGGT1450.032.6008036
AGCGGTT1500.031.4966757
AGACCGA1600.029.52949728
CCGAGAC1600.029.52949725
GCGGTTC1600.029.5281358
AATGCCG1750.026.9971521
AGAGCGG1800.026.2617595
TGCCGAG1800.026.2472323
CGGAAGA1850.024.3430791
CGATTCT2150.024.06833832
ATCTCGT1900.023.68280240
ATGCCGA2000.023.62250722
Produced by FastQC (version 0.11.5)