FastQCFastQC Report
Mon 6 Jun 2016
ERR1378692.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378692.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1187289
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTAGCG250.002107843335.9975443
TATCTCG950.030.78737339
CGTATGC1001.8189894E-1229.24800144
CGGATCT1001.8189894E-1229.24800132
CCGGATC1053.6379788E-1227.85524231
ACCGGAT1105.456968E-1226.58909230
TCTCGTA1105.456968E-1226.58909241
AGACCGG1105.456968E-1226.58909228
TCGTATG1105.456968E-1226.58909243
GACCGGA1159.094947E-1225.43304329
GCGGTTC1159.094947E-1225.4319738
CGGTTCA1159.094947E-1225.4319739
AGCGGTT1201.6370905E-1124.3723077
CTCGTAT1252.910383E-1123.398442
GAGCGGT1358.367351E-1121.6779676
ATGCCGA1358.367351E-1121.66427222
AGAGCGG1401.364242E-1020.9037555
GAGACCG1401.364242E-1020.8905527
ATCTCGT1552.3646862E-1120.32119440
AAGAGCG1452.1645974E-1020.1829364
Produced by FastQC (version 0.11.5)