FastQCFastQC Report
Mon 6 Jun 2016
ERR1378690.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378690.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1195384
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT1300.034.61139342
TCGTATG1350.033.3294943
GAGCGGT1500.033.022446
GACCGAT1350.031.66301729
CGTATGC1500.031.49636844
TCTCGTA1500.029.99654241
GCGGTTC1600.029.5278458
AGCGGTT1650.028.6330627
CCGAGAC1500.028.49671625
CCGATGC1600.028.12175831
TATCTCG1600.028.12175839
ATCTCGT1700.027.79091540
CGGTTCA1700.027.7909159
GAGACCG1550.027.57746727
AGAGCGG1800.027.5187025
ACCGATG1650.027.26958530
CGATGCT1650.027.26958532
AGACCGA1750.025.71132328
AATGCCG1900.023.68147921
ATGCCGA1900.023.68147922
Produced by FastQC (version 0.11.5)