FastQCFastQC Report
Mon 6 Jun 2016
ERR1378679.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378679.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1208825
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTA504.8839865E-835.99612429
GAGCGGT602.459057E-422.5115476
AGACCGT908.259503E-619.9978528
ACCGTAT807.5696655E-519.68538330
CATCTCG951.3166749E-518.94611439
CGTATGC851.20511744E-418.52818744
TCTCGTA851.20511744E-418.52818741
CGTATTG851.20549965E-418.5274232
AGCGGTT750.001111069817.9980667
CTCGTAT901.8667223E-417.49884242
GCTCCGC800.00171167216.87388436
GCGGTTC850.002567108715.8806458
GAGACCG1156.7892E-515.6504927
CGCCCGG1602.9669536E-715.46708613
AGAGCGG1056.0137163E-415.0076995
TCGTATG1056.040211E-414.99900743
GCGCCCG1251.3818081E-414.39845212
CCGTATT1108.5957895E-414.31664331
CGCCTGG2053.3676042E-713.16931613
AATGCCG1200.001657836113.12358921
Produced by FastQC (version 0.11.5)