FastQCFastQC Report
Mon 6 Jun 2016
ERR1378671.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378671.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1523678
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTAACC1300.038.07553532
TCTCGTA1400.035.35701441
GACCGTA1500.034.4976129
CTCGTAT1450.034.13780642
CGTATGC1550.033.3858844
AGACCGT1650.031.36146428
CCGTAAC1600.030.9363731
TCGTATG1650.029.99890743
TTACGGT300.005149523729.9979217
GCGGTTC1800.028.7480078
ACCGTAA1800.028.74800730
GAGCGGT1900.027.244796
CCGAGAC2050.025.24215325
TATCTCG2000.024.7499139
AGAGCGG2100.024.6500475
AGCGGTT2200.024.5437537
ATCTCGT2150.023.02317240
CGGTTCA2350.022.977139
AAGAGCG2300.022.5065654
GTATGCC2400.021.56171445
Produced by FastQC (version 0.11.5)