FastQCFastQC Report
Mon 6 Jun 2016
ERR1378670.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378670.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1053713
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGTTA453.4930854E-529.99683631
GCGGTTC608.197412E-626.2472328
ACCGGTT602.4690817E-422.49762730
CGTATGC602.4690817E-422.49762744
AATGCCG602.4690817E-422.49762721
CTCGTAT754.604223E-520.99878342
CGGTTCA754.6059067E-520.9977869
CGGTTAC654.2409255E-420.7670432
GACCGGT654.2409255E-420.7670429
GAGCGGT706.958939E-419.2955846
TCTCGTA750.00111057217.99895741
TATCTCG800.001711382116.87402239
ACCGCGC850.0025667815.8806799
AGACCGG850.0025667815.88067928
CCGAGAC850.0025667815.88067925
TCGTATG1004.1699744E-415.74833943
ATCTCGT900.003755094314.99912940
CGGAAGA1108.5266854E-414.3316341
AGAGCGG950.00535740614.2177995
GAGACCG950.005379381614.20902827
Produced by FastQC (version 0.11.5)