FastQCFastQC Report
Fri 10 Feb 2017
ERR1148498.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1148498.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6041157
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT470220.7783608338601364No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT246930.40874620540403106No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT237140.39254070039894673No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA182740.3024917246812159No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT151750.2511936041390747No Hit
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC101320.1677162172742738No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT100840.1669216674885291No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG81440.13480861364801477No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC69840.11560699382585156No Hit
GTACATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG67790.11221360411590033No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG67640.1119653073078551No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA63750.10552614341921589No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGGGGG161800.036.19815
CATGGGG240250.034.1046754
TGGGGGG136550.032.5258186
TATAACG4800.032.2082672
GGGTTAG27650.031.6341341
TATCACG6050.028.5021692
GTATCAA708950.027.7641011
CATGGGT80700.027.7039954
GGTTAGA30550.027.4437332
AACGCAG754100.026.2393886
GTTAGAG33350.026.2089483
GTAAGTA62750.025.5849952
GTACATT28300.025.4409121
ACATGGG728550.025.2108023
TGTAAGT63550.024.624871
GTACATG807250.024.3905961
TTAGAGC35450.024.3209114
TACATGG808750.024.2551142
ATCAACG809650.024.1249333
TATCAAC814100.024.103022