Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148498.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6041157 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 47022 | 0.7783608338601364 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 24693 | 0.40874620540403106 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 23714 | 0.39254070039894673 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 18274 | 0.3024917246812159 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 15175 | 0.2511936041390747 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 10132 | 0.1677162172742738 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10084 | 0.1669216674885291 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 8144 | 0.13480861364801477 | No Hit |
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC | 6984 | 0.11560699382585156 | No Hit |
GTACATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG | 6779 | 0.11221360411590033 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG | 6764 | 0.1119653073078551 | No Hit |
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA | 6375 | 0.10552614341921589 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATGGGGG | 16180 | 0.0 | 36.1981 | 5 |
CATGGGG | 24025 | 0.0 | 34.104675 | 4 |
TGGGGGG | 13655 | 0.0 | 32.525818 | 6 |
TATAACG | 480 | 0.0 | 32.208267 | 2 |
GGGTTAG | 2765 | 0.0 | 31.634134 | 1 |
TATCACG | 605 | 0.0 | 28.502169 | 2 |
GTATCAA | 70895 | 0.0 | 27.764101 | 1 |
CATGGGT | 8070 | 0.0 | 27.703995 | 4 |
GGTTAGA | 3055 | 0.0 | 27.443733 | 2 |
AACGCAG | 75410 | 0.0 | 26.239388 | 6 |
GTTAGAG | 3335 | 0.0 | 26.208948 | 3 |
GTAAGTA | 6275 | 0.0 | 25.584995 | 2 |
GTACATT | 2830 | 0.0 | 25.440912 | 1 |
ACATGGG | 72855 | 0.0 | 25.210802 | 3 |
TGTAAGT | 6355 | 0.0 | 24.62487 | 1 |
GTACATG | 80725 | 0.0 | 24.390596 | 1 |
TTAGAGC | 3545 | 0.0 | 24.320911 | 4 |
TACATGG | 80875 | 0.0 | 24.255114 | 2 |
ATCAACG | 80965 | 0.0 | 24.124933 | 3 |
TATCAAC | 81410 | 0.0 | 24.10302 | 2 |