Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148497.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4189923 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 35200 | 0.8401109041860674 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19059 | 0.45487709440006413 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17846 | 0.42592668170751585 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 15383 | 0.36714278520154187 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 13921 | 0.3322495425333592 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7687 | 0.1834639920590426 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 7033 | 0.1678551133278583 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 6362 | 0.1518404992168114 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG | 5886 | 0.14047990858065887 | No Hit |
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC | 5382 | 0.12845104790708564 | No Hit |
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA | 4961 | 0.11840313055872388 | No Hit |
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG | 4715 | 0.1125319009442417 | No Hit |
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC | 4594 | 0.10964401971110208 | No Hit |
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA | 4470 | 0.10668453811681025 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATCACG | 320 | 0.0 | 42.73981 | 2 |
GGGTTAG | 1915 | 0.0 | 37.912537 | 1 |
ATGGGGG | 11290 | 0.0 | 37.551254 | 5 |
CATGGGG | 16375 | 0.0 | 35.984974 | 4 |
TGGGGGG | 9355 | 0.0 | 34.13141 | 6 |
GGTTAGA | 2235 | 0.0 | 31.394909 | 2 |
GTTAGAG | 2380 | 0.0 | 29.980104 | 3 |
TTAGAGC | 2540 | 0.0 | 29.73027 | 4 |
TACAACG | 575 | 0.0 | 28.956425 | 2 |
TAGAGCA | 2560 | 0.0 | 28.568933 | 5 |
ATATGTA | 2865 | 0.0 | 27.418335 | 1 |
GTGGTTA | 2480 | 0.0 | 26.395676 | 1 |
TATGTAA | 2990 | 0.0 | 26.251705 | 2 |
GTATCAA | 57260 | 0.0 | 25.327713 | 1 |
TATAACG | 425 | 0.0 | 25.18479 | 2 |
CATGGGT | 4785 | 0.0 | 24.977156 | 4 |
AACGCAG | 59000 | 0.0 | 24.87235 | 6 |
GTTAAGA | 3595 | 0.0 | 24.478888 | 4 |
CGCATAG | 395 | 0.0 | 24.10542 | 1 |
ACATGGG | 55975 | 0.0 | 24.07103 | 3 |