FastQCFastQC Report
Fri 10 Feb 2017
ERR1148497.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1148497.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4189923
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT352000.8401109041860674No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT190590.45487709440006413No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT178460.42592668170751585No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA153830.36714278520154187No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT139210.3322495425333592No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT76870.1834639920590426No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG70330.1678551133278583No Hit
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC63620.1518404992168114No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG58860.14047990858065887No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC53820.12845104790708564No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA49610.11840313055872388No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG47150.1125319009442417No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC45940.10964401971110208No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA44700.10668453811681025No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATCACG3200.042.739812
GGGTTAG19150.037.9125371
ATGGGGG112900.037.5512545
CATGGGG163750.035.9849744
TGGGGGG93550.034.131416
GGTTAGA22350.031.3949092
GTTAGAG23800.029.9801043
TTAGAGC25400.029.730274
TACAACG5750.028.9564252
TAGAGCA25600.028.5689335
ATATGTA28650.027.4183351
GTGGTTA24800.026.3956761
TATGTAA29900.026.2517052
GTATCAA572600.025.3277131
TATAACG4250.025.184792
CATGGGT47850.024.9771564
AACGCAG590000.024.872356
GTTAAGA35950.024.4788884
CGCATAG3950.024.105421
ACATGGG559750.024.071033