Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148477.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3024079 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 31080 | 1.0277509284645012 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17660 | 0.5839794529177312 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15668 | 0.5181081578887324 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 13355 | 0.4416220607993375 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 9928 | 0.3282983017308741 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6820 | 0.22552320888442398 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 6002 | 0.1984736509859696 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG | 5147 | 0.17020058007743843 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 4921 | 0.16272723034021266 | No Hit |
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC | 4441 | 0.1468546291284057 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4280 | 0.14153069413861213 | No Hit |
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT | 3892 | 0.1287003414924015 | No Hit |
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG | 3887 | 0.12853500189644518 | No Hit |
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA | 3793 | 0.1254266174924663 | No Hit |
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC | 3771 | 0.12469912327025849 | No Hit |
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA | 3715 | 0.12284731979554768 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 3361 | 0.11114127640184004 | No Hit |
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 3128 | 0.1034364512302754 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3066 | 0.10138624024041701 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATCACG | 290 | 0.0 | 47.165745 | 2 |
GGGTTAG | 1875 | 0.0 | 39.04257 | 1 |
GTTAGAG | 2010 | 0.0 | 36.094936 | 3 |
GGTTAGA | 2080 | 0.0 | 35.453182 | 2 |
ATGGGGG | 8485 | 0.0 | 35.04295 | 5 |
TATAACG | 295 | 0.0 | 34.270763 | 2 |
TTAGAGC | 2130 | 0.0 | 34.061417 | 4 |
CATGGGG | 12515 | 0.0 | 34.022377 | 4 |
CGCATAG | 350 | 0.0 | 34.009205 | 1 |
TGGGGGG | 7205 | 0.0 | 32.844284 | 6 |
TACAACG | 365 | 0.0 | 32.58622 | 2 |
TAGAGCA | 2250 | 0.0 | 32.509113 | 5 |
CATGGGT | 3400 | 0.0 | 28.509605 | 4 |
TCACGCA | 520 | 0.0 | 26.303102 | 4 |
GTACATT | 1445 | 0.0 | 25.536325 | 1 |
AACGCAG | 51700 | 0.0 | 25.393303 | 6 |
GTATCAA | 51435 | 0.0 | 25.120926 | 1 |
ATCACGC | 570 | 0.0 | 25.039108 | 3 |
GAGTACT | 20460 | 0.0 | 23.365135 | 12-13 |
AGTACTT | 21270 | 0.0 | 23.286028 | 12-13 |