Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148459.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2915641 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20015 | 0.686469973498109 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10896 | 0.37370856014166354 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8160 | 0.2798698468021269 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 7895 | 0.27078093633612643 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 7697 | 0.26398997681813363 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4196 | 0.14391346534089758 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 3691 | 0.12659308879248166 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG | 2982 | 0.10227596607401254 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGCATA | 320 | 0.0 | 37.16485 | 7 |
AACGCAT | 370 | 0.0 | 32.142574 | 6 |
ATGGGGG | 6035 | 0.0 | 31.92475 | 5 |
TATCACG | 280 | 0.0 | 31.85613 | 2 |
CATGGGG | 9600 | 0.0 | 31.157063 | 4 |
GTATCAA | 32430 | 0.0 | 29.433712 | 1 |
CGCATAG | 385 | 0.0 | 29.345749 | 8 |
GGGTTAG | 1210 | 0.0 | 29.017118 | 1 |
AACGCAG | 33445 | 0.0 | 28.198391 | 6 |
TGGGGGG | 5045 | 0.0 | 27.345078 | 6 |
TATCAAC | 36715 | 0.0 | 25.784534 | 2 |
ATCAACG | 36555 | 0.0 | 25.783522 | 3 |
TCAACGC | 36935 | 0.0 | 25.727552 | 4 |
GGTTAGA | 1280 | 0.0 | 25.55127 | 2 |
CAACGCA | 37240 | 0.0 | 25.51684 | 5 |
ATATGTA | 1620 | 0.0 | 25.346716 | 1 |
ACGCAGA | 37305 | 0.0 | 25.248783 | 7 |
GTAAGTA | 2320 | 0.0 | 25.118742 | 2 |
CGCAGAG | 37695 | 0.0 | 25.050653 | 8 |
TATGTAA | 1720 | 0.0 | 24.546507 | 2 |