Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148445.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2734260 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21437 | 0.7840146877034372 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12088 | 0.442094021782859 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 11400 | 0.4169318206754295 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 10689 | 0.39092844133330407 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9572 | 0.35007643750045714 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 5310 | 0.19420245331460798 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5036 | 0.1841814604317073 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG | 4198 | 0.15353331431539063 | No Hit |
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC | 4142 | 0.1514852281787394 | No Hit |
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA | 4046 | 0.14797422337305158 | No Hit |
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT | 3555 | 0.13001689671062738 | No Hit |
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC | 3554 | 0.12998032374390145 | No Hit |
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG | 3220 | 0.1177649528574459 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 3191 | 0.11670433682239435 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 3186 | 0.1165214719887648 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATCACG | 255 | 0.0 | 39.642906 | 2 |
ACGCATA | 305 | 0.0 | 33.14346 | 7 |
ATGGGGG | 5100 | 0.0 | 30.664392 | 5 |
CATGGGG | 8465 | 0.0 | 29.152105 | 4 |
AACGCAT | 350 | 0.0 | 28.882158 | 6 |
TATAACG | 295 | 0.0 | 28.220375 | 2 |
GGGTTAG | 940 | 0.0 | 27.851698 | 1 |
TAACGCA | 415 | 0.0 | 27.22415 | 4 |
CATGGGT | 3475 | 0.0 | 26.86542 | 4 |
TGGGGGG | 4135 | 0.0 | 26.603882 | 6 |
GCGATTA | 390 | 0.0 | 25.936487 | 1 |
CGCATAG | 390 | 0.0 | 25.919888 | 8 |
GTAAGTA | 1730 | 0.0 | 25.435623 | 2 |
CTATAGC | 790 | 0.0 | 24.839087 | 3 |
CGATTAA | 430 | 0.0 | 23.509165 | 2 |
AACGCAG | 43285 | 0.0 | 23.202835 | 6 |
TGTAAGT | 1930 | 0.0 | 23.122288 | 1 |
GTATCAA | 43880 | 0.0 | 22.92999 | 1 |
GAGTACT | 16400 | 0.0 | 22.806341 | 12-13 |
AGTACTT | 16880 | 0.0 | 21.981684 | 12-13 |